Government Contract Security Clearance Process for Small Businesses to Win Federal Contracts — GovScout
TL;DR
- Know what types and levels of government contract security clearance you need.
- Follow these steps to get clearances for your facilities and staff.
- Meet the Defense Counterintelligence and Security Agency (DCSA) and other agency rules.
- Research the market early and work with prime contractors who need cleared small businesses.
- Use GovScout’s tools to find chances that require clearances and to keep your records straight.
Why Government Contract Security Clearance Matters in Federal Contracting
Small businesses join federal contracts by working to get security clearances. Many defense and intelligence deals ask for a clearance to see classified data or use secure facilities. A business without a clearance loses out on good work and growth. Contract officers check that you meet the security rules. Knowing how to get and keep these clearances builds a path to win high-value contracts.
How to Follow the Government Contract Security Clearance Process
Step 1: Pick the Security Clearance Level You Need
Federal contracts with classified details ask for one of these levels:
| Clearance Level | Description | Typical Contract Types |
|---|---|---|
| Confidential | Lowest level; harm to national security is mild if leaked | Some defense deals |
| Secret | Access to data that may cause real harm if shared | Many DoD deals, cybersecurity roles |
| Top Secret (TS) | Lets you see information that can cause extreme harm | Intelligence work, sensitive tech |
| TS/SCI | TS clearance with extra access to special compartments | High-end intelligence and security deals |
Source: DCSA Security Clearances Overview
GovScout tip: When you search SAM.gov with GovScout, set the filter for “security clearance required” to save time.
Step 2: Find Out What Your Facility and Staff Need
- Facility Clearance (FCL): Your office must get clearance to work with classified data. The agency checks your site, rules, and company setup.
- Personnel Clearance (PCL): Every person on a cleared contract must hold a valid clearance. This needs background work and review by the proper agency.
Check the contract papers or the DD Form 254 to learn what is expected.
Evaluator insight: Contract officers need current facility and personnel clearances so that work can start without delay.
Step 3: Send Your Facility Clearance Application to DCSA
Begin by signing up on the Defense Counterintelligence and Security Agency’s eFacility system. In this step, you will:
- Pick a Facility Security Officer (FSO) who will run your clearance tasks.
- Fill in details about your company, such as ownership, staff, and site plans.
- Accept a review that checks your background, your site, and requires staff training.
Expect the process to take between 6 and 12 months, based on how complex your setup is.
Compliance watch: Errors or missing details in your form may slow or stop approval. Follow DCSA directions and reply quickly to each question.
Step 4: Start the Clearance Process for Your Team
Staff who need a clearance must be linked to a cleared facility. The FSO sends clearance requests through the Joint Personnel Adjudication System (JPAS) or the DISS platform. The steps are:
- Fill out the Standard Form 86 (SF-86) for each person.
- Take a polygraph test if it is asked for.
- Wait while the agency reviews your information and grants clearance.
This step usually lasts from 3 to 9 months, but the time can vary.
Step 5: Match Your Business Plan with Clearance Needs
- Think about teaming with a prime contractor that has clearances if you have not yet received one.
- Use programs like the SBA 8(a), HUBZone, or SDVOSB. These programs help you join contracts that need clearances.
- Check data from USAspending.gov and GovScout to see which agencies give contracts that often need clearances.
You can also use GovScout to track opportunities that match your clearance level.
Step 6: Keep Your Clearance and Check on it Often
After you are cleared, your work continues:
- Renew facility clearances every 5 years or earlier if rules ask for it.
- Re-check staff clearances on schedule to avoid gaps.
- Hold regular security training and position reviews.
Failing to follow these checks may risk the loss of your clearance and current contracts.
Data Snapshot: Security Clearance in Federal Contracting
- The DoD leads in deals that require security clearances, with over $150B in contracts involving classified work in FY2021–FY2025 (USAspending.gov).
- About 70% of the work with clearances goes to large prime contractors, while small businesses get more work as subs or in prime roles.
- DCSA’s new methods have cut initial clearance wait times, yet waits may still go beyond 6 months (DCSA Annual Report 2023).
Agency buyers like the DoD, DOE, NSA, and parts of the intelligence community usually buy this work.

Small Business Example: Acme Cybersecurity Solutions
Scenario: Acme Cybersecurity Solutions is a HUBZone small business that sees more DoD deals demand a Secret clearance on GovScout.
Execution:
- Acme picks a skilled Facility Security Officer and starts its Facility Clearance application on the eFacility system.
- They use GovScout’s proposal guides to write bids that match security rules in the contract papers.
- Their cybersecurity team fills out SF-86 forms for clearance through the FSO and the DISS platform.
- Acme joins forces with cleared prime contractors to gain work experience while waiting for clearances.
- They update their job opportunities in GovScout and get ready for regular checks.
This plan helps Acme win a cleared contract in 18 months and sets them up for work with higher clearance needs.
Common Pitfalls and How to Avoid Them
| Pitfall | How to Avoid |
|---|---|
| Incomplete or wrong data in FCL or PCL forms | Check all details carefully and ask a legal or security expert. |
| Picking the wrong clearance level for a contract | Read the DD Form 254 and follow the agency rules before bidding. |
| Underestimating the time needed for clearances | Begin the process early and allow several months before deadlines. |
| Missing ongoing compliance steps | Run regular training and audits; mark important dates on your calendar. |
| Ignoring teaming options to build your clearance profile | Team with experienced clear contractors to learn while growing. |
FAQ: Government Contract Security Clearance
Q1: Can a small business apply for a Facility Clearance without a contract?
No. A Facility Clearance is given only when a business has or expects a contract that needs it. The business needs backing from a federal agency or a prime contractor.
Q2: How long does it take to get a security clearance?
A Facility Clearance needs between 6 and 12 months. A Personnel Clearance takes about 3 to 9 months. Time may vary by case.
Q3: What expenses come with a clearance?
The government covers the cost of the investigation. Your business spends money on administrative tasks and hiring a Facility Security Officer.
Q4: Do all agencies use the same security clearances?
No. DCSA mostly handles DoD work. Some agencies, such as DOE or NSA, have their own rules and may ask for different clearances.
Q5: How does GovScout support clearance-related contract work?
GovScout helps you filter and track deals that require clearances. It also gives you proposal guides and manages your job list.
Next Steps: Your Government Contract Security Clearance Checklist
- [ ] Check the contract papers and DD Form 254 for clearance needs.
- [ ] Pick or hire a skilled Facility Security Officer.
- [ ] Register and send your Facility Clearance application using DCSA’s eFacility.
- [ ] Gather and prepare SF-86 forms for your team’s clearances.
- [ ] Build ties with cleared companies for extra work chances.
- [ ] Set up a plan for regular compliance checks and training.
- [ ] Use GovScout to search SAM.gov, track opportunities, and find proposal guides.
Written by GovScout (Cartisien Interactive), a team that has completed 100+ government and enterprise projects; CAGE 5GG89.
Editorial note: Checked against primary sources such as DCSA, SBA, FAR, and USAspending.gov.
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